Artificial Intelligence and Robotics Methods in Computational Biology
Papers from the 2013 AAAI Workshop
Amarda Shehu, Juan Cortés, Jianlin Cheng Organizers
AAAI Technical Report WS-13-06
published by The AAAI Press, Palo Alto, California
This technical report is also available in book format.
Contents
Organizers
Amarda Shehu
Preface
Amarda Shehu, Juan Cortés, Jianlin Cheng
A Contact-Assisted Approach to Protein Structure Prediction and Its Assessment in CASP10
Badri Adhikari, Debswapna Bhattacharya, Xin Deng, Jilong Li, Jianlin Cheng
A Multi-Tree Approach to Compute Transition Paths on Energy Landscapes
Didier Devaurs, Marc Vaisset, Thierry Siméon, Juan Cortés
Using Protein Fragments for Searching and Data-mining Protein Databases
Chen Keasar, Rachel Kolodny
Pareto-Based Optimal Sampling Method and Its Applications in Protein Structural Conformation Sampling
Yaohang Li, Ashraf Yaseen
Geometrical Insights into the Process of Antibody Aggregation
Kasra Manavi, Alan Kuntz, Lydia Tapia
An Evolutionary Search Algorithm to Guide Stochastic Search for Near-Native Protein Conformations with Multiobjective Analysis
Brian Olson, Amarda Shehu
Rigidity Analysis for Protein Motion and Folding Core Identification
Shawna Thomas, Lydia Tapia, Chinwe Ekenna, Hsin-Yi (Cindy) Yeh, Nancy M. Amato
Packing Models for Multi-Domain Biomolecular Structures in Crystals with P212121 Space-Group Symmetry
Yan Yan, Gregory S. Chirikjian
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