AAAI Publications, Twenty-Seventh AAAI Conference on Artificial Intelligence

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Simplified Lattice Models for Protein Structure Prediction: How Good Are They?
Swakkhar Shatabda, M. A. Hakim Newton, Abdul Sattar

Last modified: 2013-06-29


In this paper, we present a local search framework for lattice fit problem of proteins. Our algorithm significantly improves state-of-the-art results and justifies the significance of the lattice models. In addition to these, our analysis reveals the weakness of several energy functions used.


Protein Structure Prediction; Simplified Models; Lattice Fit;Cubic Lattice; FCC Lattice; Energy Models, Local Search, Constraints

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